Molecular Structures of Plants

Structure of Plant Receptor Molecules
Phytochrome B Photoexcited structure of the plant photoreceptor domain, phy3 LOV2 PDB ID: 1JNU \| info
Cryptochrome Structure of cryptochrome 1 in complex with FAD and non-hydrolysed analog of ATP PDB ID: 1U3D \| info
TIR1 – Nuclear auxin receptor TIR1 nuclear receptor of auxin from Arabidopsis thaliana in complex with IAA and IAA7 fragment PDB ID: 2P1Q \| info
ABP1 – Cytoplasmic auxin receptor Auxin Binding Protein 1 from Zea mays (1.9 Å); structure of IAA binding pocket PDB ID: 1LRH \| info
AHK4 – Cytokinin receptor Arabidopsis histidine kinase 4 sensor domain in complex with trans-zeatin PDB ID: 3T4L \| info
GID1 – Gibberellin receptor Gibberellin receptor GID1 in complex with GA₃ and DELLA-protein fragment GAI PDB ID: 2ZSH \| info
BRI1 – Brassinosteroid receptor BRI1 plant steroid receptor ectodomain in complex with brassinolide PDB ID: 3RJ0 \| info
Calmodulin PDB ID: 1CLL \| info
Calmodulin in complex with CDPK PDB ID: 1CM1 \| info
Homeodomain in complex with DNA PDB ID: 1B8I \| info
Leucine zipper protein in complex with DNA PDB ID: 1NWQ \| info
bHLH-motif domain in complex with DNA PDB ID: 1A0A \| info
Zinc-finger TATA-motif in complex with DNA PDB ID: 1G2D \| info
Molecular Structure of Plant Photosystems
Photosystem II Architecture of the oxygen-evolving center PDB ID: 1S5L \| info
Light-harvesting complex II Photosystem II-associated light harvesting complex from Pisum sativum PDB ID: 2BHW \| info
Phycobiliprotein Phycocyanin from Gracilaria chilensis PDB ID: 2BV8 \| info
Cytochrome b₆/f Cytochrome b₆/f complex PDB ID: 1UM3 \| info
Plastocyanin Structure of plastocyanin and cytochrome f complex from Spinacia oleracea PDB ID: 2PCF \| info
Photosystem I Structure of photosystem I from Synechococcus elongatus PDB ID: 1JB0 \| info
ATP Synthase F0 subunit F₀ subcomplex of F₀F₁ ATP Synthase from Escherichia coli PDB ID: 1C17 \| info
ATP Synthase F1 subunit F₁ subcomplex of F₀F₁ ATP Synthase from Bos taurus PDB ID: 1E79 \| info
Bacterial photosystem of the purple bacteria Bacterial type II photosystem of the purple bacteria Rhodopseudomonas viridis PDB ID: 1PRC \| info
Photosystem II Architecture of the oxygen-evolving center PDB ID: 1S5L \| info
Electron-transfer reactions in mitochondria
Respiratory complex I Crystal structure of the entire respiratory complex I from Thermus thermophilus PDB ID: 4HEA \| info
Respiratory complex II Crystal structure of complex II from Escherichia coli with ubiquinone bound PDB ID: 1NEK \| info
Respiratory complex III Cytochrome bc₁ (complex III) from Bos taurus PDB ID: 1BGY \| info
Respiratory complex IV Cytochrome coxidase (complex IV) from Paracoccus denitrificans PDB ID: 1QLE \| info
Cytochrome c Cytochrome c PDB ID: 3CYT \| info
Procaryotic ribosome large subunit Procaryotic ribosome large subunit from Haloarcula marismortui PDB ID: 1FFK \| info
Introduction to methods of resolving the biomolecule structure
Synthetic protein Synthetic protein 1VYE used to validate structure prediciton algorithms by X-Ray crystallography PDB ID: 1VYE \| info
Synthetic protein Synthetic protein 1RIK used to validate structure prediciton algorithms by X-Ray crystallography PDB ID: 1RIK \| info

#	Name	ID	URL	Short URL
	Introduction to methods of resolving the biomolecule structure
1	Synthetic protein	1vye	open
2	Synthetic protein	1rik	open
3	Myoglobin (X-Ray)	1a6m	open
4	Myoglobin (NMR)	1myf	open
	Electron-transfer reactions in mitochondria
5	Respiratory complex I	4hea	open
6	Respiratory complex II	1nek	open
7	Respiratory complex III	1bgy	open
8	Respiratory complex IV	1qle	open
9	Cytochrome c	3cyt	open
10	Procaryotic ribosome large subunit	1ffk	open
	Molecular Structure of Plant Photosystems
11	Photosystem II	1s5l	open	goo.gl/mIjPy
12	Light-harvesting complex II	2bhw	open	goo.gl/s2f5d
13	Phycobiliprotein	2bv8	open	goo.gl/YgmsM
14	Cytochrome b₆/f	1um3	open	goo.gl/b3krl
15	Plastocyanin	2pcf	open	goo.gl/91PTW
16	Photosystem I	1jb0	open	goo.gl/YWXf2
17	Ferredoxin	1a70	open	goo.gl/ucHTe
18	ATP Synthase F0 subunit	1c17	open
19	ATP Synthase F1 subunit	1e79	open
20	Bacterial photosystem of the purple bacteria	1prc	open	goo.gl/KJd2Y
21	Ferredoxin	1a70	open	goo.gl/ucHTe
22	Photosystem II	1s5l	open	goo.gl/mIjPy
	Structure of Plant Receptor Molecules
23	Phytochrome B	1jnu	open	goo.gl/LbiVm
24	Cryptochrome	1u3d	open	goo.gl/hEQgU
25	TIR1 – Nuclear auxin receptor	2p1q	open	goo.gl/V3a3b
26	ABP1 – Cytoplasmic auxin receptor	1lrh	open	goo.gl/z3l4A
27	AHK4 – Cytokinin receptor	3t4l	open	goo.gl/PK1Mf
28	GID1 – Gibberellin receptor	2zsh	open	goo.gl/sUwqA
29	BRI1 – Brassinosteroid receptor	3rj0	open	goo.gl/vERQ6
30	Jasmonate receptor	3ogl	open	goo.gl/E3MoT
31	PYR1 – Abscisic acid receptor	3k90	open	goo.gl/7ApA6
32	Calmodulin	1cll	open	goo.gl/9ObY4
33	Calmodulin in complex with CDPK	1cm1	open
34	Homeodomain in complex with DNA	1b8i	open	goo.gl/Qlhwu
35	Leucine zipper protein in complex with DNA	1nwq	open	goo.gl/jgA28
36	bHLH-motif domain in complex with DNA	1a0a	open	goo.gl/ZlFLV
37	Zinc-finger TATA-motif in complex with DNA	1g2d	open	goo.gl/5G0G8
	Структура нуклеиновых кислот
38	A-form of DNA	molbio_dnaaform	open
39	B-form of DNA	molbio_dnabform	open
40	Z-form of DNA	molbio_dnazform	open
41	Hydrogen bonds in B-form of DNA	molbio_dnahbonds	open
42	H-form of DNA	molbio_dnahform	open
43	Переход B-формы ДНК в ДНК Z-формы	molbio_dnaz2b	open
44	Topoisomerase I	molbio_top1	open
45	Topoisomerase IIa	molbio_top2	open
46	Topoisomerase IV	molbio_gyrase	open
47	Gyrase B	molbio_gyraseb	open
48	EcoRI	molbio_ecori	open
49	Cas9	molbio_cas9	open
	Организация бактериальных и эукариотических геномов
	Молекулярные механизмы копирования полинуклеотидов
	Процессинг первичных РНК-транскриптов
	Трансляция - рибосомальный синтез белка
50	Aminoacyl-tRNA synthetase type I	1qrs	open
51	Aminoacyl-tRNA synthetase type II	1asz	open
52	Structure of the 30S procaryotic ribosomal subunit	1j5e	open
53	Structure of the 50S procaryotic ribosomal subunit	1q7y	open
54	Structure of the 50S procaryotic ribosomal subunit	1jgo	open
55	Распознавание последовательности SD в 70S рибосоме	4v4j	open
56	Распознавание последовательности SD в 70S рибосоме	4v5g	open
57	Факторы инициации IF-1, IF-2 и тРНК	1zo1	open
58	Комплекс EF-Tu с тРНК и ГТФ	1b23	open
59	Фактор терминации RF-1	1zbt	open
60	Фактор терминации RF-2	1gqe	open
61	Фактор терминации RRF	1ek8	open
62	Шаперонин GroEL/GroES	1aon	open
	01 – Introduction
63	2 nucleosomes of Xenopus laevis	lnmo_1zbb	open
64	Nucleosome of Xenopus laevis	lnmo_1aoi	open
65	Synthetic protein	lnmo_1vye	open
66	α-helix / ferritin-like protein	lnmo_1bcf	open
67	Гомеодомен-подобный белок	lnmo_1enh	open
68	Immunoglobulin-like β-sandwich	lnmo_1cd8	open
69	Four-bladed β-propeller	lnmo_1pex	open
70	Single-stranded left-handed β helix	lnmo_1lxa	open
71	β-prism II	lnmo_1jpc	open
72	α/β structure	lnmo_1pfk	open
73	α+β structure	lnmo_2pil	open
74	α+β structure, GFP-like	lnmo_1ema	open
	02 – Nucleic acids
75	Cytidine	lnmo_cytidine	open
76	Hydrogen bonds in B-form of DNA	lnmo_dnahbonds	open
77	A-form of DNA	lnmo_dnaaform	open
78	B-form of DNA	lnmo_dnabform	open
79	Z-form of DNA	lnmo_dnazform	open
80	H-form of DNA	lnmo_dnahform	open
81	DNA quadruplex structure	lnmo_dnaqform	open
82	RNA hairpin	lnmo_1ylg	open
83	TT dimer	lnmo_1ttd	open
84	TT dimer reparation by photolyase	lnmo_1tez	open
85	tRNA	lnmo_1tra	open
86	TATA-box binding protein	lnmo_1tgh	open
87	Enhanceosome component	lnmo_1t2k	open
88	Homeodomain in complex with DNA	lnmo_1b8i	open	goo.gl/Qlhwu
89	Leucine zipper protein in complex with DNA	lnmo_1nwq	open	goo.gl/jgA28
90	bHLH-motif domain in complex with DNA	lnmo_1a0a	open	goo.gl/ZlFLV
91	Zinc-finger TATA-motif in complex with DNA	lnmo_1g2d	open
92	EcoRI-DNA post-reactive complex	lnmo_1qps	open
	03 – Storage and transport proteins I
93	Myoglobin (X-Ray)	lnmo_1a6m	open
94	Hemoglobin	lnmo_1hho	open
95	Erythrocruorin	lnmo_2gtl	open
96	Ferritin	lnmo_3is7	open
97	Transferrin	lnmo_1h76	open
98	Siderophore	lnmo_4k19	open
99	Lipid storage protein lipovitellin	lnmo_1lsh	open
	04 – Biological membranes and transport proteins II
100	Cholesterol	lnmo_cholesterol	open
101	Lipid micelle	lnmo_m65	open
102	Crystalline structure lipid bilayer	lnmo_popc-crystal	open
103	Gel structure lipid bilayer	lnmo_popc-gel	open
104	Fluid structure lipid bilayer	lnmo_popc-fluid	open
105	Bacteriorhodopsin embedded into lipid bilayer	lnmo_popc-br	open
106	FepA membrane protein	lnmo_1fep	open
107	FauA membrane receptor for siderophore	lnmo_3efm	open
108	Maltoporin	lnmo_1mal	open
109	α-Hemolysin	lnmo_7ahl	open
110	Calcium ATPase	lnmo_1su4	open
111	Aquaporin	lnmo_2abm	open
112	Sodium-potassium channel	lnmo_2zxe	open
	05 – Biological signaling
113	Acetylcholine receptor	lnmo_2bg9	open
114	Acetylcholine binding protein	lnmo_1uv6	open
115	Acetylcholine binding protein in complex with α-cobratoxin	lnmo_1yi5	open
116	Insulin	lnmo_4ins	open
117	Insulin receptor	lnmo_2dtg	open
118	Insulin receptor domain in complex with insulin	lnmo_3w14	open
119	Insulin receptor transmembrane domain	lnmo_2mfr	open
120	Insulin receptor tyrosine kinase domain	lnmo_1irk	open
121	Insulin receptor tyrosine kinase domain	lnmo_1ir3	open
122	G-Protein	lnmo_1gg2	open
123	Calmodulin	lnmo_1cll	open
124	Calmodulin in complex with CDPK	lnmo_1cm1	open
	06 – Hormone reception
125	Adrenergic receptor	lnmo_2rh1	open
126	Rhodopsin	lnmo_1f88	open
127	TIR1 – Nuclear auxin receptor	lnmo_2p1q	open	goo.gl/V3a3b
128	Estrogene receptor (ligand-binding domain)	lnmo_1a52	open
129	Estrogene receptor (DNA-binding domain)	lnmo_1hcq	open
130	BRI1 – Brassinosteroid receptor	lnmo_3rj0	open	goo.gl/vERQ6
	07 – Drug action
131	Estrogene receptor binded to tamoxifen	lnmo_3ert	open
132	Serotonin receptor binded to ergotamine	lnmo_4iar	open
133	MDR-transporter	lnmo_2onj	open
	08 – Structural proteins
134	Actin	lnmo_1atn	open
135	Actin and gelsolin complex	lnmo_1yvn	open
136	Actin and profilin complex	lnmo_1hlu	open
137	Actin in complex with myosin	lnmo_1alm	open
138	Cadherin	lnmo_1l3w	open
139	Collagen	lnmo_1bkv	open
140	Бактериальный микрокомпартмент	lnmo_2zv5	open
141	GroES/GroEL shaperonine	lnmo_1aon	open
	09 – Photosynthesis
142	Photosystem II	lnmo_1s5l	open	goo.gl/mIjPy
143	Light-harvesting complex II	lnmo_2bhw	open	goo.gl/s2f5d
144	Phycobiliprotein	lnmo_2bv8	open	goo.gl/YgmsM
145	Cytochrome b₆/f	lnmo_1um3	open	goo.gl/b3krl
146	Plastocyanin	lnmo_2pcf	open	goo.gl/91PTW
147	Photosystem I	lnmo_1jb0	open	goo.gl/YWXf2
	10 – Molecular machines
148	ATP Synthase F0 subunit	lnmo_1c17	open
149	ATP Synthase F1 subunit	lnmo_1e79	open
150	26S Proteasome	lnmo_4cr2	open

Structure of Plant Receptor Molecules
Phytochrome B Photoexcited structure of the plant photoreceptor domain, phy3 LOV2 PDB ID: 1JNU \| info
Cryptochrome Structure of cryptochrome 1 in complex with FAD and non-hydrolysed analog of ATP PDB ID: 1U3D \| info
TIR1 – Nuclear auxin receptor TIR1 nuclear receptor of auxin from Arabidopsis thaliana in complex with IAA and IAA7 fragment PDB ID: 2P1Q \| info
ABP1 – Cytoplasmic auxin receptor Auxin Binding Protein 1 from Zea mays (1.9 Å); structure of IAA binding pocket PDB ID: 1LRH \| info
AHK4 – Cytokinin receptor Arabidopsis histidine kinase 4 sensor domain in complex with trans-zeatin PDB ID: 3T4L \| info
GID1 – Gibberellin receptor Gibberellin receptor GID1 in complex with GA₃ and DELLA-protein fragment GAI PDB ID: 2ZSH \| info
BRI1 – Brassinosteroid receptor BRI1 plant steroid receptor ectodomain in complex with brassinolide PDB ID: 3RJ0 \| info
Calmodulin PDB ID: 1CLL \| info
Calmodulin in complex with CDPK PDB ID: 1CM1 \| info
Homeodomain in complex with DNA PDB ID: 1B8I \| info
Leucine zipper protein in complex with DNA PDB ID: 1NWQ \| info
bHLH-motif domain in complex with DNA PDB ID: 1A0A \| info
Zinc-finger TATA-motif in complex with DNA PDB ID: 1G2D \| info
Molecular Structure of Plant Photosystems
Photosystem II Architecture of the oxygen-evolving center PDB ID: 1S5L \| info
Light-harvesting complex II Photosystem II-associated light harvesting complex from Pisum sativum PDB ID: 2BHW \| info
Phycobiliprotein Phycocyanin from Gracilaria chilensis PDB ID: 2BV8 \| info
Cytochrome b₆/f Cytochrome b₆/f complex PDB ID: 1UM3 \| info
Plastocyanin Structure of plastocyanin and cytochrome f complex from Spinacia oleracea PDB ID: 2PCF \| info
Photosystem I Structure of photosystem I from Synechococcus elongatus PDB ID: 1JB0 \| info
ATP Synthase F0 subunit F₀ subcomplex of F₀F₁ ATP Synthase from Escherichia coli PDB ID: 1C17 \| info
ATP Synthase F1 subunit F₁ subcomplex of F₀F₁ ATP Synthase from Bos taurus PDB ID: 1E79 \| info
Bacterial photosystem of the purple bacteria Bacterial type II photosystem of the purple bacteria Rhodopseudomonas viridis PDB ID: 1PRC \| info
Photosystem II Architecture of the oxygen-evolving center PDB ID: 1S5L \| info
Electron-transfer reactions in mitochondria
Respiratory complex I Crystal structure of the entire respiratory complex I from Thermus thermophilus PDB ID: 4HEA \| info
Respiratory complex II Crystal structure of complex II from Escherichia coli with ubiquinone bound PDB ID: 1NEK \| info
Respiratory complex III Cytochrome bc₁ (complex III) from Bos taurus PDB ID: 1BGY \| info
Respiratory complex IV Cytochrome coxidase (complex IV) from Paracoccus denitrificans PDB ID: 1QLE \| info
Cytochrome c Cytochrome c PDB ID: 3CYT \| info
Procaryotic ribosome large subunit Procaryotic ribosome large subunit from Haloarcula marismortui PDB ID: 1FFK \| info
Introduction to methods of resolving the biomolecule structure
Synthetic protein Synthetic protein 1VYE used to validate structure prediciton algorithms by X-Ray crystallography PDB ID: 1VYE \| info
Synthetic protein Synthetic protein 1RIK used to validate structure prediciton algorithms by X-Ray crystallography PDB ID: 1RIK \| info